Scaffold JGI25131J35506_1003891

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1003891
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2137
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000161	Metagenome / Metatranscriptome	1845	Y
F005131	Metagenome	411	Y
F006484	Metagenome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10038912	F006484	N/A	MNDKEIAYQNTLGGLWANRCHGCGCTPKNDEWSNREKNLCIDCKDEE*
JGI25131J35506_10038913	F005131	AGGA	MKDIKKKLVKQVKRSRPSLAQEIKDMPMKDFRVLWFVVQQGLKVKKKH*
JGI25131J35506_10038916	F000161	N/A	VKKFKIEISHASPGQLQTIAAELKIMGNNWERFGPKIQINGDKLQAPNLRISVSSYKRQAASRKRHTMNTFQ*