Scaffold JGI25131J35506_1003643

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1003643
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2215
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F005314	Metagenome	405	Y
F033218	Metagenome / Metatranscriptome	178	Y
F049698	Metagenome	146	Y
F105370	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10036431	F105370	N/A	AQQEAGIHNEVMIKFLDEQVKKLQSDVEKLKDRQREFTNGKIQ*
JGI25131J35506_100364310	F033218	AGAAGG	MGQPETKKLICPRCKGNGFFKVKESVERQVDTVVQCPMCSSQGEIDEEKANTIYVDADGVHRVH*
JGI25131J35506_10036432	F000567	GGA	MKESLLKLTQKITTWHEGMFKYITLKSKTSIFFTWLLVFICLYEIFEHIVIPLFLIWWGLS*
JGI25131J35506_10036434	F049698	N/A	MNRKHYAFFLKKNRRKDPIAKDLSDGRYHQRVVKDKTKYSRKEKHGQTNRYYEHSDSPETSA*
JGI25131J35506_10036435	F005314	AGGAG	MVKPIDITNTVIVPKPQPKYDKLNSFFIGRAPMDAIDKGNVEVEANPKEKIKQPHLDNSVIQDTEWKDLY*