Scaffold JGI25131J35506

Basic Information
Taxon OID	3300002511 Open in IMG/M
Scaffold ID	JGI25131J35506_1002536 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002511 Open in IMG/M

Scaffold ID

JGI25131J35506_1002536 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_1000

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2653
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2653

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10025364	F009536	N/A	MEKDLMKQALELMPGQLKEEIKINLENTKSYTRLFVKVLDEIDSMKVILPKFTALKNSILKINKKNHSKIVDEIKYSVPKTQSTLSAGDIDRWLSSAKKGEKLIYYTGSTFDHRSVKEESVFRKAKNLAMDYDNIPFKNKKYQYRGSVRGEWGCNYKDIITLVQQKVASLQRDKIWDEXKKXXXPGNIISYPIYNYIMIKQ*
JGI25131J35506_10025365	F000567	N/A	MKQTLLKLTQKITTWHEGMFKYLTLKSKTSVFFTWLLVFICLYEIFEHIVIPLALIWWGFQ*
JGI25131J35506_10025366	F013896	GGTGG	MICDKCNGNGFTLVKGETIQCKKCLSSGEIKETLTPPKYLDDDLAHVYQTLYEESLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDNMMAKILETDVKPYKKETLQ*
JGI25131J35506_10025367	F080498	AGGA	MIKKIINLFLIMALFSCTPTMQNVAPKPIEKDNKFIEQILRNIITQGIDF*
JGI25131J35506_10025368	F045144	GGA	LTWNRGLYYHLNRTGKSIRKYPDGKDPLKKELFGQTRVCTKCNKRKSTFQFHWKTDYRYKDKVTKRLQKNCGVCRVKHDNDKYSENPDTYLRRKILTLQQDSHRHRGRRKFLLNYDKFFKIWRKQFKKTGLKCPLSGETMTHTLGNGSVLTNMSVDRIDSDKDYVIGNVQVVCLMANIMKNRYDNKNLLSWSKKIVKQLEKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25131J35506_1002536

Overview

Ecosystem & Geography

Associated Families

Sequences