Scaffold JGI25131J35506_1002308

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1002308
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2777
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y
F015879	Metagenome	251	Y
F041254	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10023081	F041254	GGAG	MEKTKLTKDEYLDSLDPDNLNLSKKDLLDFCHSCIDEWKANRIGNFKFIV
JGI25131J35506_10023083	F008755	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVRDFLNDPVNKKSGWKSKDARFFRLGFQKVAKENNFNVMNVGVTPTPSRSKTNKGSMNINVKSKQKNPPPMGEQLKKPEEVKGLGALPTTPQLEQQQAQAVQYSAQSVGQIFETIFNIFSSRTGCSPFTK*
JGI25131J35506_10023084	F009404	GAGG	MSSDEPETIQPKGEALVKHCPICGVEFDETVLTNRWLKCDSCETVFQVKVKTGE*
JGI25131J35506_10023085	F005148	GGAG	MKYKNWEDNLKKTLPIMEEVECKKCERKFFDEWNLLSLSTFDMCMLCANRNIDKETIERKYHNVK*
JGI25131J35506_10023088	F015879	GAG	MKKDDVIIITCNVCGAMSHAIKTKILKGYYVKDEFILCKICFGELK*