Scaffold JGI25131J35506_1001636

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1001636
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3363
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F037762	Metagenome / Metatranscriptome	167	N
F101007	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10016361	F101007	AGGAG	MSMMIRHPLRNFFSSPFDVDWNEAYKQSMIPEDGTIIVQRELVEKKYRVKHESDGTVKYIPITEEVMTSESD*
JGI25131J35506_10016362	F037762	N/A	MGNAKVSNWKNFERRVASRVGGKRIPITGRKCLDIDHPTLDIECKYRKNLPVWLFKDAWSQANTGSGIPVIAVGEYNSSDIFTIISIDTLVKLLERSIIDVNDDSTPTP*
JGI25131J35506_10016366	F015347	GAGG	VSTLALRCQRNARMLLEVASTECEEMHSDMHEDAMYPDKETIYSASEEMRRFGERMNDIADQLMTIYNKMDHHQYMIELDDLRSESYAN*
JGI25131J35506_10016367	F020384	N/A	MQHKKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQTRRAIRHIQIIKRTAPTNSTGDLAMVEAYRLYDRLQRLSGYPMYFADNTRKNPGRVASDRGRDYTNARPASVRWDVAAMMAVPMGGQERNWWRPPPRPLPVKHFTREELEREYPSFTVSKKREDAT*
JGI25131J35506_10016368	F024807	GAGG	MLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDGLISHLDSFLIDMDKERKPQRSAEGVDHAEAHGEMLMAQHDDDPNPYHGDYSED*