Scaffold JGI25131J35506_1001071

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1001071
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4330
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AAA164-I21 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002415	Metagenome	561	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10010718	F002415	AGG	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTAYSGTNVQNHCGRDSYIGREKGFEAYHKELKDCEIRIAVYRDPIDKIIAGFYYCQEFKPHFNDLDGFLGNYDAYLRRDNYIRIHCRTNTAMLGPDPSIYTHVWNMNEIDTKVLPFLEQLGGGKIQKTRLREHEPRTITEAQKAQAKEVMAIDYENGWCKELISSKI*