Scaffold JGI25131J35506_1001070

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1001070
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4333
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034600	Metagenome	174	N
F040578	Metagenome / Metatranscriptome	161	Y
F092206	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10010701	F034600	AGGAG	MVKQVKVEENAVPVSFRNIASQTILFRLVNPKRSSSKSYLVFEKVKNSTTIQEAFSKGYRSIDYEYDTTKNNRFKKAHLLSSTQLNKDKKAMYQELLAHNAAYIKSNKVSEEIKKAQSYYSDLVSKLK*
JGI25131J35506_10010705	F092206	AGGA	MRWIADLQAKGYDWQKDRRLFQVCGMVTALTLEINTKGQMMMTSRRKAPSPYKWLKENLNCSGSRDKVLKRANEWIGSYFKAGPMPEYLANQLNKGNIEISIPGKLIKKGETNGV*
JGI25131J35506_10010708	F040578	N/A	TIREFLKAGGKTIDLDWDRERGFIATQDKDKPGSAAKSPKSTYKL*