Scaffold JGI25131J35506_1000733

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1000733
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5649
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F026025	Metagenome / Metatranscriptome	199	Y
F089401	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_100073311	F004179	N/A	MNKEIILEVKNKYGVDRIYPSCHIANALIKLKAGKTFTKADLNVFKSLGLIIKWKAGQI*
JGI25131J35506_10007336	F026025	AGGGGG	MLFKRGDKFTLVVKNKTHNGNPNKYTHLRYGVFDKKSKFLVSKNCIIFKDTVAHEHREMKLTNIFAITNITRLDEEQEKQTPSDTCRSKTCENSLIGWQSKINPLYCVDCG*
JGI25131J35506_10007338	F089401	GAGG	MTEKNICQNPKCCDNTTDDRWNKKLNKFLSRKAYRKSKPTNNSIYEYFCTTSCAYSWLDDNLENIIERKHCPNKILDKIIRQ*