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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002511 Open in IMG/M |
| Scaffold ID | JGI25131J35506_1000306 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_1000 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11039 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (80.95%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005148 | Metagenome / Metatranscriptome | 410 | Y |
| F008755 | Metagenome / Metatranscriptome | 328 | Y |
| F009404 | Metagenome / Metatranscriptome | 318 | Y |
| F015417 | Metagenome | 255 | Y |
| F015879 | Metagenome | 251 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25131J35506_100030610 | F015417 | GGA | MEDFQVLVGVLSSALIAVNLYVIKSLSNLCDRISHLEGKLSSQA* |
| JGI25131J35506_100030617 | F015879 | GGAG | MKKDDVIIITCNVCGAMSHAVKTKIPKGYYVKDEFVLCKICFGDLR* |
| JGI25131J35506_100030619 | F005148 | GGAG | VKQKKWEEHLKRILPESEEVECKKCGIKFVDDFNLVCLGALDLCLLCSNRYLDKPTIERAYNVKQ* |
| JGI25131J35506_100030620 | F009404 | GAGG | MSSNNEPEEIQPKGESLVKYCPICGVELEDTVLTNRYWKCLSCESIFQVKVRAEN* |
| JGI25131J35506_100030621 | F008755 | GAG | MNKSRVARDLWRKVFNDNIIDMKDGDARKQVTTDFLADPVNIKAGWKKKDARFMRLAFQKIAKEQGVNVMNLGLSPTPIRSKTQKGSLNINVKSKQKNPAPMGEQIKKPEEVKGLGALPTTPQLEGQQAQATQYSAQSVGQIFNTLFNIISARTGCSPLSQNELIALGESWSPIFNIYFSGHSLWVMPVVISAPIILSRVAEISKLKKEKEVKERYGMEDVPTKDEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |