Scaffold JGI24699J35502_11097600

Overview

Basic Information

• Taxon OID: 3300002509
• Scaffold ID: JGI24699J35502_11097600
• Source Dataset Name: Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2274
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014393	Metagenome	263	Y
F027231	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24699J35502_110976003	F027231	GAG	MLGRNVRVCGAIRANRGIPRGLEGEGKRLKKETSELQRNGDVMVQVRNDKTCANGKYDP*
JGI24699J35502_110976004	F014393	AGGA	MQEDDILCELYADTCYDLSDYSDNESSDCDNDVPTTNSHKQLRSSTGPLTPQFPHQFFLTSIKTIFITV*