NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24699J35502_10946428

Scaffold JGI24699J35502_10946428


Overview

Basic Information
Taxon OID3300002509 Open in IMG/M
Scaffold IDJGI24699J35502_10946428 Open in IMG/M
Source Dataset NameMicrocerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1160
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePointe-Noire, Republic of the Congo
CoordinatesLat. (o)-4.7Long. (o)11.83Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036517Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
JGI24699J35502_109464281F036517GGAMQQGNFINVFLARHVSGTHASSGKLDVGLQHMFSAPSFWMDCGLDSRCVGRVCCANVAVQHPHS

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