NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24700J35501_10918928

Scaffold JGI24700J35501_10918928


Overview

Basic Information
Taxon OID3300002508 Open in IMG/M
Scaffold IDJGI24700J35501_10918928 Open in IMG/M
Source Dataset NameMicrocerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4338
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePointe-Noire, Republic of the Congo
CoordinatesLat. (o)-4.7Long. (o)11.83Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006796Metagenome364Y
F090558Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
JGI24700J35501_109189282F090558GGAMKEGCSGGACLCEGFHEGDLEGGLLYWGTQKMRFLREMQNVL*
JGI24700J35501_109189288F006796N/AMASLRGSVGTGTKEDESSTGRIWAAGFHHVTAHSRLAPILKLMNRLFL*

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