Scaffold JGI24700J35501_10874112

Overview

Basic Information

• Taxon OID: 3300002508
• Scaffold ID: JGI24700J35501_10874112
• Source Dataset Name: Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2307
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000009	Metagenome	8556	Y
F000153	Metagenome	1895	Y
F002021	Metagenome	603	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24700J35501_108741121	F002021	N/A	NLVAHGDARGEVKGKLANGVGSQYSHATSERDISSITKADAYTSAASSRLN*
JGI24700J35501_108741124	F000153	AGGA	MAKAALNKKKTLFTSKLDINLKKKLVKCYIWSMALYGIETWTLRAADQKYL*
JGI24700J35501_108741125	F000009	GGA	MEKISWTDHVRNEEVLLRVNVQRNILHEIRKRKANWIGHILRRNCFLKQGIEGKIKGEMEVTRRRGRRRKKVLNDFKCRRRYSYLKEKALDRIMWRNRFRGGFGPVVRQNTE*