Scaffold JGI24697J35500_11186427

Overview

Basic Information

• Taxon OID: 3300002507
• Scaffold ID: JGI24697J35500_11186427
• Source Dataset Name: Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1554
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Hymenoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014393	Metagenome	263	Y
F027231	Metagenome	195	Y
F037271	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24697J35500_111864271	F014393	N/A	MALCRNVLQEDDILSELYVDTLSEVSDYSGNESLDSDSDVPTTRSHKQLRSSTGPLTAQFPHPFFLKSIKTVFITV*
JGI24697J35500_111864272	F027231	GAG	MLDRNLRVCNTVRANRDIPHDREGEGKRLKKGKSAFWRNGDLMVQVWKDKTCANDKYSP*
JGI24697J35500_111864274	F037271	N/A	VYRTLNTNKVKYKKFLHEVGRSWISEVQNQSESSFDDLHLPQKEPKQDLPGRLSSDFRIHKLKNIVGGVEGKKKYPLTFNVLAFKRLQPPAGRSFSGI*