Scaffold JGI24697J35500_11142365

Overview

Basic Information

• Taxon OID: 3300002507
• Scaffold ID: JGI24697J35500_11142365
• Source Dataset Name: Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000521	Metagenome	1058	Y
F003061	Metagenome	510	Y
F078097	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24697J35500_111423651	F000521	N/A	MNNQLDATKHVELIEIINKPLLLHQLVIYIIVSGMHGHKNIPSANLFFSGIIMSSPYSPR
JGI24697J35500_111423652	F078097	AGGA	MSGTRAISTTSRRELASGFFSLQGKAPKEIYAIPKETLACFFPGRAKDLSAPRV*
JGI24697J35500_111423653	F003061	N/A	MHHCIKFILFWNDTLHVSDGLFIHHQEFKTVHTATGIYQTDSVVFLLACWSG*