NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24697J35500_11048847

Scaffold JGI24697J35500_11048847


Overview

Basic Information
Taxon OID3300002507 Open in IMG/M
Scaffold IDJGI24697J35500_11048847 Open in IMG/M
Source Dataset NameMicrocerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1035
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePointe-Noire, Republic of the Congo
CoordinatesLat. (o)-4.7Long. (o)11.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000104Metagenome2242Y
F001860Metagenome625Y

Sequences

Protein IDFamilyRBSSequence
JGI24697J35500_110488471F000104N/AMRRTAGYTWTDYKTNKQIAKELKITPILDKLLKYKSSWKQHVNRMPRNILPRVMKHYSPTGRRNHGRPLKRLL
JGI24697J35500_110488472F001860N/AMIYLLTATGLTPGGSSTVHIYTQTVHRTTLLTTLVGRLSGIRTQIGQTKINDELAA*

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