NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24705J35276_11442387

Scaffold JGI24705J35276_11442387


Overview

Basic Information
Taxon OID3300002504 Open in IMG/M
Scaffold IDJGI24705J35276_11442387 Open in IMG/M
Source Dataset NameNeocapritermes taracua P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014393Metagenome263Y
F057471Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
JGI24705J35276_114423871F057471AGGAVRMISTIHDATVVNKGRKDRKTNMEIKKPYIVVQYSKFVKGVDRA
JGI24705J35276_114423872F014393N/AVAIMALHRNVLQEDDILCELYVDTRSDVSVYSDNESLDSDVPTTSSHKQLRSSTRPLTPQFPHLFFLTSNNTIFITVLD*

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