Scaffold JGI24703J35330_11738896

Overview

Basic Information

• Taxon OID: 3300002501
• Scaffold ID: JGI24703J35330_11738896
• Source Dataset Name: Neocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3242
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Sterculioideae → Pterygota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014393	Metagenome	263	Y
F027231	Metagenome	195	Y
F061011	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24703J35330_117388962	F061011	GAG	MTFNCQRREVKWDPPGRLSSDFRIHKLEKIVGGGEGKKKYPARQYKVCAARKKRSETRNICKFCIVLLHKGSCFEKYHSVTNY*
JGI24703J35330_117388964	F027231	N/A	VRLTQTSLHRNVRVCDTKRANRGIPRDLEGEGKCLKKETVFWRNGDIMVQVWKDKTCANDKYDP*
JGI24703J35330_117388965	F014393	N/A	MALCRNVLQEDDILCELCVDTRSDVSDYSDNECLDGDSDVSTTSSHKQLRSFTGPLNPQFPHPFFLTSNKKIFITV*