NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24703J35330_11668150

Scaffold JGI24703J35330_11668150


Overview

Basic Information
Taxon OID3300002501 Open in IMG/M
Scaffold IDJGI24703J35330_11668150 Open in IMG/M
Source Dataset NameNeocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016682Metagenome245Y
F080194Metagenome115Y
F095677Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
JGI24703J35330_116681502F080194GAGGVSISVVKCSEVLQCSDGPSNEVSNIIRRHIDNRKLLLICILLLSHSFIFFRLYFLSVCIWLYNDKID*
JGI24703J35330_116681503F095677N/AMTKLINTIYETGQWPKDFTEVTMIVLKKKPQVTKCSDHRTISFIAHTAKIVAKILRRTEKKIEYVLGEDQFGFRRGKGTRNAIGMLGIILE*
JGI24703J35330_116681504F016682AGCAGGVKYADDLVLLAKEEKVLQDMIDKLIEIGGCCGMEMNVEKNKSNENLKTTIPSKNYDRPKTTRECGIF*

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