Scaffold JGI24703J35330_11439879

Overview

Basic Information

• Taxon OID: 3300002501
• Scaffold ID: JGI24703J35330_11439879
• Source Dataset Name: Neocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1015
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Lepidosauria → Squamata → Bifurcata → Unidentata → Episquamata → Toxicofera → Iguania → Phrynosomatidae → Phrynosomatinae → Sceloporus → Sceloporus undulatus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015353	Metagenome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24703J35330_114398791	F015353	AGG	MVSNRYRKSCGSRRKNSKSCSDDWHR*RF*SAFRHFRTHFAESFCMSKSS*KMDPTRSCEIPSFSAIDIAKIWRSSKISS*I*SIISGVVTVLGRPGRSAIQVEKSPRLNWDTQFLTVAYDGACSPNVSVRMA*ISFEALPCRKKKT*CQLASRCC*NRARRVTCFLSASVTRKNLQFGT*TDPSFQRHYLFRPTTSGSSSG*