Scaffold JGI24187J35170_1011594

Overview

Basic Information

• Taxon OID: 3300002491
• Scaffold ID: JGI24187J35170_1011594
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant BLVA 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2558
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24187J35170_10115942	F002372	AGGGGG	MPTRREDRLWATVHQRSMHLRALLDGLDMVDVDVTYELDYYPYAIVDLLLLRVDAPPLVLRSAYVHANRQWEYHSEWALRIIDAALLLVEEYRADPSAAGAVGV*
JGI24187J35170_10115943	F002795	GGAGG	MMATSGLTLCGMVASYREFASRRDGRTYRVITVFGDLVLDGVILCQVDGYDVFVDSPGYTRGEMVELPARLQFVRDSSGRPAVRLYVDEGVR*
JGI24187J35170_10115944	F002229	GGAGG	MVTLLTVDGVEEIDYLPSDAEIRTSLDDCALYGILLHGVTWIRLSSGAGWWTIIGGRRVVATLGWCWFTDDGRGYWSPTLASVSSEACAMLGVEVEVDDGD*
JGI24187J35170_10115946	F004024	GAGG	VQSERDYVRQSPSLGDDDMMFLDARATLAAALARAVVGYSDNRVRALAWLAVATPRLYDRIAPIVESSAIRQSPGASRTLRDALRALSLEEYMRRRDERRSER*