Scaffold JGI25128J35275_1022629

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1022629
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003095	Metagenome	508	Y
F074767	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10226291	F003095	N/A	MPRNSKHIKGDQAELIAQEYFIRKGFYVFKNISQHGPVDMVVLDKDGYTMLVDVKAISLRSKNGWKVNRSPSREQDLLGVHLCYVNLDTREVLDKMPTKQKHKNNIVDIREWKK*
JGI25128J35275_10226292	F074767	AGGAGG	VTEKLQEEKVALYAEVKKYRDENEALQKQKIYLQSKCKQAGKAILDQEVTIAGLKRDIDRLAEENTNLRTMYNAKE*