Scaffold JGI25128J35275_1018825

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1018825
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1722
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F090864	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10188252	F035970	GGA	MDNNFKIILQTAKELAEDYGKEGWTGDCNDFTQASSSISQELTNLEVERLWDEFPNQEFIANGVIFTFTRQGRDKVIKLEQTDNN*PPYLTTPTLSVTLLT*
JGI25128J35275_10188253	F090864	GAG	MIHLVAHSKSGAGHALQESDGRWVVRFFYNYRKYFVFTKDAFKHGYLKDCGIVNTGKNNG
JGI25128J35275_10188254	F025385	GGAG	MKYTDDNGVIQAFMDQQSSKSRNMKTDGQSLFSFDLRIAEHIPDGQGRASTLVYDYTYGGGAYVSQTTSNHVRLTKKQVPKPNWVSVNEAQKVGLVPQVIESPRNDTPRRSF*