Scaffold JGI25128J35275_1008137

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1008137
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2792
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10081373	F014114	AGG	MKNYKATDPEMIQAQEDLAKLSNLSDRVISNDKDLFEELMTIQGKLCEISAIKANFMQRYEDILDEQARIETQLCVFQHEMLHSFELVIRYYKTKKKGFK*
JGI25128J35275_10081374	F056669	N/A	MSLIKSYVFSIQEMGYDPYQLNKLSSEEWDNLLTKALKSDKKLYETLILTRCKLKLEKNRAI*
JGI25128J35275_10081375	F101298	N/A	MMLLLKVFTYPKFMNQNDRDFQKVLQALNTFDKKLSNLEIVVDKLAKATTDYATSQQQLNKDQSSLNKDLGEGIKMLGNSMSDIIQFLQKRGGNN*