Scaffold JGI25128J35275_1008021

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1008021
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2812
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011578	Metagenome	289	N
F021321	Metagenome / Metatranscriptome	219	Y
F025518	Metagenome / Metatranscriptome	201	Y
F029472	Metagenome / Metatranscriptome	188	N
F033077	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100802110	F021321	GAG	MNRDYMANMLFNINDAIETLKGHSITDXIIEEYDESQFDEEPNTLMDIPKDWEGSSFTIGDCLLDLQTDINELHDYFSKEIA*
JGI25128J35275_10080212	F033077	N/A	MTEDNTTYKVLRLTTEGFTEVDTINAVNLTKAQCDAVIQNLIADGVNPKEIRAVRDN*
JGI25128J35275_10080213	F029472	GAGG	MLSRKTIENLTDKLMVGVANYVTEDPRFTDLLNELVPEAIDLELGEVDDYSVVQIITSIQQHLRCSPNHSQVHYPRCPL*
JGI25128J35275_10080215	F025518	N/A	MSEEKLTHYTKTSLREESKLYLPTVREFYPHLDGMLTDRIAKYCAIYSKGTDRASIRQAINDFEEVFDQELTQ*
JGI25128J35275_10080216	F011578	AGGAGG	MITAFITGVVVAIPTSLXTMKLLNSSLFISNTELREANAKISLIINNLDDFREERMKDKMERLGITDKLDERLSTKIK*