Scaffold JGI25128J35275_1007157

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1007157
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2994
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051541	Metagenome	144	N
F076167	Metagenome	118	N
F104045	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10071572	F076167	AGGAG	METEKNYLIKVFGLGYAGQYTLPLSGIVDADRINDEATHLIITKKLILERDKFYSHKVRITYEEL*
JGI25128J35275_10071573	F104045	AGGAG	MSVDGKESWLENRAIELFEEIQRKNPHLSWNEIDELCYKQAEEDYMNQPEVDYKKIAEEQAIADEE*
JGI25128J35275_10071577	F051541	N/A	QRKEVNPLKDLAKAVITRACLDSLGHITNSSYCGTTEKSILMDTAKRFFDPNIKSFRLWCDLAGGEPEYVKDLHNDLTYHYNCGRLKNFNTRVVIETLLKKL*