Scaffold JGI25128J35275_1005731

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1005731
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3377
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037684	Metagenome	167	Y
F039590	Metagenome	163	Y
F072373	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100573110	F037684	GAGG	MTINPNKKYKFVDKDLVNGFVVLTGKELNAILEKSYKQHMENKNEKT*
JGI25128J35275_100573112	F072373	AGGA	MNWTSKEKSKYWNKAYQEYSLESGIPIESDDGLNLINWIKINPYVAEAIENRAIEFLKENN*
JGI25128J35275_10057312	F039590	AGAAGG	MIKKIQVTLLVEVDTEDEFICPSGDPLLENCVVNTVEDRFFTDPVKILEVKEYKND*