Scaffold JGI25128J35275_1004307

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1004307
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3962
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041434	Metagenome	160	Y
F062837	Metagenome	130	Y
F073652	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100430710	F062837	N/A	MDIHYGILQLIIGLCAIMVGGLVVYFVIQYNIKKEEEQKEKERNKSPYEI*
JGI25128J35275_10043075	F073652	AGGAG	MTKEEIDMDNELEKXYEKFHDWLDSCPFKWTESSHPTSGMXSVNFDIEEQ*
JGI25128J35275_10043078	F041434	GGA	MTNKGKVKNKSVIKFTKDDIKSVYINSHKYDTWATITLKTGVEIRSHSLELEQLILDKHKSYVAFGAITHTWLSMNNGEDFKV*