Scaffold JGI25128J35275_1004284

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1004284
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3973
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078604	Metagenome	116	Y
F089953	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10042842	F089953	AGGAGG	MEDLINEEILENIHEGYEIYKMTVDFDCKNDLPIIRYAIRERSCFADQDLKLVRHNNMSFFLTLEDAEKALSEIVQKRFEEQAQ*
JGI25128J35275_10042846	F078604	N/A	MTFDEKFFIISTNATIKNVSKYLDLDFYETELKTNNELKPHIKDLDINATYYGKKCIKCTIPTLFIQIEYKDLNQDIFLIDHDVCLYEQHQNLEELENYKNKFDFNFSSQVDPEVYVLIDAFHMGYGCMCLSSEGY*