Scaffold JGI25128J35275_1003922

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1003922
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4163
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031695	Metagenome	182	Y
F055203	Metagenome	139	N
F071653	Metagenome	122	Y
F076603	Metagenome	118	N
F106087	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100392213	F055203	AGGAG	MNACESCGDLHDPSDMVNTIEDFYFCYTCEEKNRELYDFMWFSKFSKKVIKEEDNG*
JGI25128J35275_100392215	F031695	GGA	MTINFIEEWICDGCGGIFDKTEMVESIQLPYYSCQPCEDELKKTMEEVNDN*
JGI25128J35275_100392216	F106087	GGAGG	MTIKIPTPTFLEIQSELADWLMSTELGHDVYLTMLIRTEDEESYTDEGQEIFNEKYDDVEAFLNNYFEKEDK*
JGI25128J35275_100392218	F071653	GAGG	MSKNQTDVDVENFVKDIPSDTILIEVRGGMVSDVHNDPNGYMLFDWDSIGEQDTME
JGI25128J35275_10039224	F076603	AGGAG	MIQELNQQLKSMYLEPRNKLRVDVDYVVGRLEHIVEVATQYEIDADSQVDGYDYLVKDIEEFLNELKQNMENHNGK*