Scaffold JGI25128J35275_1002739

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1002739
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5082
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100273912	F006793	N/A	MTNYRSTNEEKEQRINYAADQLAKGERSMVIVKKLAKRYSVSPQQARDYVREGRKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTTIDQVGCWDDAHDSYLFKNFSEAKKKVKHGDLDALDGTDTDEEMPF*
JGI25128J35275_100273913	F016820	N/A	MTKKEFSYVVITSSGEKLEQIYGVYQDVEGACYGARSALTTLFPKHGDEAKIIRCEIISTEDAKNQFEDSKPKDIFEKADCEDGYCPLPTQQVS*
JGI25128J35275_100273914	F012584	N/A	MKLRTYLPENTFILSEDSLPEEHHTDRFGKIMVFRKDVGWTVIPLTDAVQFLAMKHTHWTFTPDIPHD*