Scaffold JGI25128J35275_1002168

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1002168
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5719
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F030928	Metagenome	184	Y
F049295	Metagenome	147	N
F053545	Metagenome	141	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10021681	F053545	N/A	KVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGKDGS*
JGI25128J35275_10021683	F083388	GGAGG	MVGMLMQKRIANLEWVIKRCSPEFKEVWERKLEQLINRRVEMAYERMVENARSVH*
JGI25128J35275_10021684	F030928	GGAG	MKEWLKTLEAYTSFSILGFTVFICLIVIVVNCKYIIKLEGTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD*
JGI25128J35275_10021685	F000720	GAGG	MTLIKENKTVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGKQPEKKQRELSTDPYAMKE*
JGI25128J35275_10021687	F049295	GAG	MFDEIEIEWIPEDTGAPYEVDMNVVEMDTPAHIVDKWCKEKYGHTNWARMGVMSPEELLGNPHDFDFDEGIIYFKNAHLV*