Scaffold JGI25128J35275_1002130

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1002130
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5777
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F038713	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100213013	F019393	GAG	MYSEIKTYTSMSGFIQAHEGLWHMLGVKYKKLDKETVIINNTKWKLVKGNMTCLKK*
JGI25128J35275_100213020	F038713	AGGAG	MIFVTFTIDYGGYEYLDYAWFKDYGEAHYENGESITDKDIIRDVYGEGRSDEDFEENFNEETNVYTDYNDDTIAVHKVQEMTQKELDVLVKMGVLHR*