Scaffold JGI25128J35275_1001688

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1001688
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6499
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005178	Metagenome / Metatranscriptome	409	Y
F012529	Metagenome / Metatranscriptome	280	Y
F062259	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100168811	F012529	AGGAG	MLEDKTYKIKVGEYCDAVIYVYERHRKCLNPKDEPEKHKWKHWKEVVTVIPVCSGYDDFQDKSGNFHNNIRVTVDALSELYGNSPDYEMGVSYTMNTHQYINC*
JGI25128J35275_100168818	F062259	AGGAGG	MKTEKELDNEVREAFDRAIDAIMFDYMYMGTEKGRDDLEYMGFKHIETREYIKIPKCGVAFMKKKETA*
JGI25128J35275_10016888	F005178	AGGAG	MMYILIWMQLFSTQSVEXYQLGNYATLEECQIELSKAAKMITHKSETVACLEVEVQQ*