Scaffold JGI25128J35275_1001557

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1001557
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6805
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007259	Metagenome	354	Y
F009034	Metagenome	324	Y
F032626	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100155710	F032626	N/A	MXKENLQTKVXALQDNLKVKHDELTEVQERLTVARRELANANKPTLSQDDMVNLVDLLQGMFHDILNDADTSDLSPEFSIGYDNTIELDCLDMSSIEVHSGDIENVLEHVFNIVDEESDNS*
JGI25128J35275_100155715	F009034	N/A	MKTIKFLKDNKIQIGKRVFRPYCISDLPNNFGCINYGESDGVTEWFGYKGFTYIPEK*
JGI25128J35275_100155718	F007259	N/A	MIFDKELRAEVKIQRDAIHSLLKYHLPKCDLTKIGDSEIQLTWHSNPHCIRETLLTCSMYGDWQFEEHQWESFDNYHYSTDLKVDYTSPANDVVNKLMKLLK*