Scaffold JGI25128J35275_1001217

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1001217
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7802
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F057748	Metagenome	136	Y
F105877	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10012171	F105877	N/A	RFPSPSPNLLEIKMSNHENEMLKENIFDLWVEYLELDGWPKGCNETYAEAARRTESEWLEMN*
JGI25128J35275_100121716	F057748	N/A	MTKVYDFDWHKLQREDILRKSLGYSEDVWRLMKDAGYNVTDQEDRDQFFQDLEDADQ*
JGI25128J35275_10012173	F029404	GGAGG	MAXLNFVEVDLGGDSWKITWDHSHRIKVKTTGKESGLKYTMYSLTKLTPSQAYDIAMVQLEWLKKEIKNGNV*
JGI25128J35275_10012178	F040869	GAGG	MNMKVFDQVYGELSLLQQEDKEDLQIAEESLMAAMVFTMTNAPSVLNGLCLISNTFNGILSEYTLKDIQLKGE*