Scaffold JGI25128J35275_1001144

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1001144
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8000
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F016292	Metagenome	248	Y
F032821	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10011441	F001839	N/A	MKYFEKFDKDLINNQNLNSHEKLIYVICKSFEFAPNGCRISHKYLMRRTGIKTIATLTKCLDRLQLFGMLARKQINNGTNHYVFEKNLMQDYIQHNLNKRRKITLAKKKQQKDYAINDPKVVHIVTNKK*
JGI25128J35275_10011444	F032821	GGA	MIEIKLDLYDLFAASQTGLTRVFESLRLKQDWGHNYKGSVNDQIAKSISGACAELAVCRYLNTAFNFHVNHGANPDVMFGDVRCQVRSQLPKKHNSLIIRPKGSKAGEMYILVIDKSPTFEIKGFVNSSYVLNTTKYLTDFGISDRPEVHSVPIDKLTPINFLKDGAWN*
JGI25128J35275_10011448	F016292	N/A	MTNHPKILGDCYKKFNLAHTSKSQNTIPDDIRFRNYIVLTPKEKAKLPSNCSFTGGTIAHEIIQSIKCKNKTFREAVKLIQDKITNYDPIDEKDKIKFNYIIENLEPLVQNHLDNINEIPKQDWKAELEYTHWADGIKTYFLSYVDLVGSTNFGDIKNVFGTLTKTKKGFSYSKKKCPRVPYHSDCLQIALYSKLLPKHKPFLTYASNDDRVIFTPENCVELRTESLQYYYEELVLYQKCWETKLELANGDAKVLAMLCKPDLSEIRKDGFWWKGIDPDIIKRFRSYYE*