Scaffold JGI25128J35275_1000604

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1000604
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11095
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (21.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F018534	Metagenome / Metatranscriptome	234	Y
F025275	Metagenome	202	Y
F027835	Metagenome / Metatranscriptome	193	N
F048249	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100060411	F008453	N/A	MNNYAVYKVFRDWNKKTKMLIPNLTREQAQTIVQNTPSEPDSMIVFDEMK*
JGI25128J35275_100060413	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKALEAKGKLRAILMDDDNAESCTTSTDGMQSVVNFDIEECEHQIVRIIELKPTWPESKDIREYLVWDQMNCEAPFDGEYLPTDMAVIKDLCERQEAVADTFNVESFHEFVLDLWYGNTAMFDADDLCIYYFKLPKEFKS*
JGI25128J35275_100060418	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGATVAIEYRHQVSRYIGQCSTIAYLVAYDEFGNRISLRNQTYGCFGDEEKQFHQWFAEKMAGAVEMDARRETELNRAIDEALA*
JGI25128J35275_100060419	F048249	N/A	MKTINDMKTSIFNTRIIRKGSQVLYRGSWGRDPQKIAEVIAIEQTQGPNEKYGDEVDAVTLDDHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK*
JGI25128J35275_100060421	F027835	N/A	MKTQEHIDALYERMKTAGGFECALIMAYMKADGGNAKLLEDAFKGSRFDLTPKPKFNHGVEVLRAAAYWSGERDEYLNDDKTAYQIIDEYLKENEQ*