Scaffold JGI25128J35275

Basic Information
Taxon OID	3300002488 Open in IMG/M
Scaffold ID	JGI25128J35275_1000345 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002488 Open in IMG/M

Scaffold ID

JGI25128J35275_1000345 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14343
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (81.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14343

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (81.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F067640	Metagenome	125	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100034517	F059942	GAGG	VKAGDLISFKPIDFGLEDWSNPSIVMSEYKSPNEGLWSVWCDGIFCVIDDTNYEILHLTSSLLDETTKG*
JGI25128J35275_100034524	F018286	AGGTGG	MKTLTTFILLGMVDSFDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGRVFYIVKLHDNQDAVIICQEDVKDEPRRKRAD*
JGI25128J35275_100034525	F010950	N/A	MNIWVVRQTCLFDHESYVTTHLTEKGALITAIKTVREDMVDGFDEDEIDDYRPDMPHHPEEDLMQYSREQLRGMVQDWWEYSFDINEQAQYQIYETQVEA*
JGI25128J35275_100034526	F057352	AGGAG	MKLWVLHGTYENELFSSIHLTEKGCALAAIADVLDFLGVGDEESALQVMNDCYAYTETDGKQTEAFEWDHDKMKEMSSKDLWKIFTDWTEISWDRMSDRSYYIDATPQMVQA*
JGI25128J35275_100034528	F067640	AGGAGG	MIEVGSLLRMWGNHSTWIALDEIADTVLVVSQKRNHKMWASKSAFEVIG*
JGI25128J35275_10003453	F105146	GGA	MIEVGNIVRSKYTVDRHRARIGIVIQMREGAYEDQPLAQVFWPHRRDTGWVEAKDMEVVSD*
JGI25128J35275_10003459	F004771	GGA	MKRRVRIGDLVTMYTHDTGLIGVVLERHPNGVEVDGESTTQIGIKWFNGANSFEWEPEGWLEVVSEGG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25128J35275_1000345

Overview

Ecosystem & Geography

Associated Families

Sequences