Scaffold JGI25128J35275_1000008

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1000008
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61820
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (81.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y
F025414	Metagenome	202	Y
F026439	Metagenome	198	Y
F046417	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100000878	F046417	N/A	VGLLEDVKDFFEIPPKHNLKVGDLVTCTCHGGVAIVLALYDSPRDLTDPKMNMAKLWWIRRAYPNMERVWMHTIKRLRPYGQLTKD*
JGI25128J35275_100000885	F026439	AGGAG	MASQLDHVILYPDAVQQFEDCILPMIQEDEKNLGHVDIPARSEAWSNFADDLHANEQISDWQVANWEHPPCCD*
JGI25128J35275_100000886	F025414	AGG	MQVGSLVRETMDGNIGVILAWESDGWLVSFPKHGMVFHMLPRLLEVVDNSPDISLTT*
JGI25128J35275_100000889	F008590	GGAG	MQIGDLVTYWFQLPRWRKGLSVDVGVIVETGKYTGNRDVKVLWKGEMRTEGSQHLTLVDDISLTTQNSQKGDQS*
JGI25128J35275_100000891	F009562	AGGAG	MLAIPLIRTDDDTNVTPIERTALACEQVITALMMQATLMDPTISDQEAETFTTLSVATIIPAEA*
JGI25128J35275_100000892	F014672	GAGG	MGKFKPGDLVRIKDGTNQDGIPDHRVGMIIEDGHTSERYSGPYTIVLLGTDLTLKFHEMFLEPFTTP*
JGI25128J35275_100000897	F017285	AGGAG	MSWSGTVTCSHCYRQGHNKRKCPVLTEQICDKYKGNVLAAAKEREAGNENDAKWYDERAEVYRQQYIKRTKIDLATGKTVTNKAAKAERMKKVTCGYCQKRGHTRRTCQAVKVDKQIFIEETRRVRIAALESAREVGIGIGSMLPIRSTGYDKDGEWRRDILTMRYIQSALWDDCHANRPTLIVKHIDARKLGAAXQSRYISRDNITKLVQANDTALRYAAAEGDDLPPSSLVPTLDPPKGWLQPTEQSLEKAITQVFPTKGNRHSIQRGYDYAYPSGTIREIIKDLGLTEHFPRENWS*