NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25129J35166_1070539

Scaffold JGI25129J35166_1070539


Overview

Basic Information
Taxon OID3300002484 Open in IMG/M
Scaffold IDJGI25129J35166_1070539 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025764Metagenome200Y
F034595Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
JGI25129J35166_10705392F025764AGGLEKITSVKDLIRVDKDYKDSSRSSASVCYGGLAGMLVATVKWADKFIRKDEPALALKLLEQALKENGKVNDVVERYNRRFNAESEKV*
JGI25129J35166_10705393F034595N/AQKIMNINDRLDNMSKEELISLVKEIKITCESNRSIDSPIRNTLNFILNLIKGIL*

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