Scaffold JGI25129J35166_1038090

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1038090
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 980
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F003385	Metagenome	490	N
F015325	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10380902	F003385	AGGAG	MTNKIDINNIPDNFVVTYKAKTHNGEEIEGGGKIIARNGSWLKPNTDXTGKAFISKNGVVCFIXWDNDATPDEKGLQWRMAKXPISIKATQ*
JGI25129J35166_10380903	F015325	N/A	MTKKIWLVIEKNNYGGTTNNYNIAKIADTIEQATTYKVHLDALNDSKNKAYFLASDVSTIIDKVVYHHNKSVEEKPLILKDEVKDTSISQMPF*
JGI25129J35166_10380904	F000319	N/A	MIGDLLLIILGVAICYTYYYFKQDYKRNKEIKKQERLNKIK*