NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25129J35166_1029522

Scaffold JGI25129J35166_1029522


Overview

Basic Information
Taxon OID3300002484 Open in IMG/M
Scaffold IDJGI25129J35166_1029522 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013189Metagenome / Metatranscriptome273Y
F100974Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
JGI25129J35166_10295221F100974N/ADIGRMYNFVITASTLTLTGKVPANGEGFVISPDNATLTLLQTFAWDNYGGTWADASTAWGDVAFAPSAVETGQNQPDAGSLTLSGSVPTFQLSQLWYVPSGSLSITGFVPSALEGFNFSPSAGSLTGFGGGTLWDDGTGNWTSHSEAWGLGTLSPTAGVTYTFVIDPQGNLVFTPYDPAWPQVGQPKYISEIIMS*
JGI25129J35166_10295223F013189GAGMQEIEKNLKFVAQEHTLAKNVAEHLEKKYPGWLWAVHVMDGLAVVKSMRLSGNWGFVLHEDKIDNDYKAVTRAGGEXLERYRQSTNGFNQTKYSDLVMDNKTGQLNGDFS*

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