Scaffold JGI25129J35166_1022829

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1022829
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1408
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F086310	Metagenome	111	Y
F106169	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10228292	F106169	GGA	MKVGDLIRLSPAYTDYIGVVTQILCEDEHGPLDVEVLTRDGLESWEADEAEIINESR*
JGI25129J35166_10228293	F004771	GGAG	MKVGDLVRMKTHDTGLVGIVLAIYTRGLSDNAQIGIKWFKTSGNTEWEPESWLEVVSASG
JGI25129J35166_10228297	F086310	GGAG	MQVGDIVKHFLTEQIGIVVDISCNRDSRNIAPVQVMWTTQGESLFGPGHQ