Scaffold JGI25129J35166_1011901

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1011901
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2197
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027019	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10119011	F027019	N/A	ILDVFQQTVMMDNLGVNLSTDVAQYGDVIHLPHIGVPALQAVTHGEEIAXDITGSGTETKTDLTLDQYNVSSVYVPDITKVQSSYDLLSIYAKQLAYANARGFDNFMHYQVANNFNGLFRSGTGAVGGDSTAQMHVVTTGSALSQANLTSLMALILGETGGTDGWHLVLSPDMYSSLNALTSYSQGTQAPLGADFGKTGNAGTLLGMPVWVAQSPYMGSASSGADVAAVEGKGILAVEGFDSSGAQEDDIVYGYAIHESALYFAFSKQAKMTASYRHSYLSTLVTCESAYGGAFRNTNAAGNRRCFALIDYEAA*