Scaffold JGI25129J35166_1005284

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1005284
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3640
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012463	Metagenome	280	Y
F024106	Metagenome	207	Y
F029400	Metagenome	188	Y
F029745	Metagenome	187	Y
F058991	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10052841	F024106	AGAAG	MEESTFHGSFQVGDLITLKHHPGAPIAIVTSLSASVFDRIMIQFFDTSRPEMAAPGHWKVVSTIESVSKKG*
JGI25129J35166_100528414	F029400	GGAG	VKIGDLVTFCPEAWGTPLEDRPLGVVMNVEDYRDGIEPATFLMVTAIFPGDDIPYSSNIKDFEIINEDW*
JGI25129J35166_100528418	F012463	GGTGG	MKIGDIVKLIAEPQVDWMFNYLEETFQVLDFPTENGVELKMIGTVPDWIWIIGKDNLEVTEEEK*
JGI25129J35166_10052847	F029745	AGGA	MPSKAPRVGDVVKSRVTTESPAGFIVGTEGIHVWVRFFDTAAQGESWDVYSRRDTLEVISRANSR*
JGI25129J35166_10052848	F058991	GGAGG	VQTHADFRIGMLVRWHGDNYADDDPNDLGIVVKMPGQNFHGYYHIAWSVTDTVSHHSPDMIEESLYQGRLEVVR*