NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25129J35166_1003528

Scaffold JGI25129J35166_1003528


Overview

Basic Information
Taxon OID3300002484 Open in IMG/M
Scaffold IDJGI25129J35166_1003528 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4603
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033600Metagenome / Metatranscriptome177Y
F072246Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
JGI25129J35166_10035282F072246N/AMNNKKPTKDYSQLARWLCLFEAVNIIAEKAEKIGHTKDCLKPIPINKYINERYPSVLKDVEYEFSNSLHTHRR*
JGI25129J35166_10035284F033600N/AMMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAQASPATYNQISADLVPFPGDHLIEQLGSAYKNIADATGLLVQLFENPSXHLDEKVVQAATLKLQKIQDLIKSVSEDLDHDESDS*

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