Scaffold JGI25129J35166_1003067

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25129J35166_1003067

Scaffold JGI25129J35166_1003067

Overview

Basic Information
Taxon OID	3300002484 Open in IMG/M
Scaffold ID	JGI25129J35166_1003067 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_130
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4985
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012400	Metagenome	281	Y
F041753	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10030677	F012400	AGGAG	MKYTIKKFNGDDQYSWAVFRKADVKGMRSPIFYGQATPIINGLDQYEARYHRDRLEKIA*
JGI25129J35166_10030679	F041753	AGGA	MIKYQVHFEKPTCKGIKRGIRTIKARNEAEAIIKCKSVVANSFGHWVNRLANEVAV*

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