Scaffold JGI25129J35166_1002327

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1002327
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5840
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017655	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10023272	F017655	AGGA	MTNGNPFSKSISLGHIIATIGIIIAGFTFIYDLREAISILQFKGDTVEQRLDRIVNRTDSQFDQIMDHLVRLEEKIDTLKEDN*