Scaffold JGI25129J35166_1000581

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1000581
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12077
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081755	Metagenome	114	Y
F094413	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10005812	F081755	AGGAG	MSTVVGNVNVDGDKIFYSPDTNNLDGTPSCDIFGYLIASSGLTIHTDPLDVVEKLFELKRMSTTYSPYISTILENILCGDIDDYTEHLTGTPLEFITSWGEVVDVKDLSWI*
JGI25129J35166_100058120	F094413	GAGG	MNREDRIYEDVHNYTKYKLVEMLIDRFQEDRIKLDNLNAIEDLADDVLKVLSVAGMKYYNELKGNFDK*